Jules Lab Experiment#

THIS-IS-AN-EXPERIMENT, NO CODE has been reviewed for ANY purpose!

Python Medical Data Science Project#

This project demonstrates the use of Python for handling and visualizing medical data, specifically focusing on FHIR resources, pandas for data analysis, Bokeh, Matplotlib, and Altair for visualization.

It includes utilities for creating example FHIR Patient and FHIR Observation data, flattening FHIR bundles for analysis and example notebooks in Marimo for visualization.

Interactive Visualization#

You can explore the visualization interactively:

View on GitHub Pages: https://wuxxin.github.io/fhir-research/
- Run Interactive Marimo in the Browser: https://wuxxin.github.io/fhir-research/marimo/

Setup#

make buildenv

Running#

Interactivly edit the Notebook in Marimo#

uv run marimo edit notebooks/lab_visualize.py

Export the matplotlib plot as image#

uv run python notebooks/lab_visualize.py -o lab-matplotlib.png

LAB-Plot

Docs#

make docs

Testing and Linting#

Run Tests:

make test

Run Linter:

make lint